TSTMP: Target Selection for human TransMembrane Proteins

Manuscripts

Varga J, Dobson L, Remenyi I and Tusnády GE (2017)
TSTMP: target selection for human transmembrane proteins.
Nucleic Acids Research 45, D325-D330.
[Journal] [Medline] [PDF] [Database]

Related manuscripts

Varga J, Dobson L and Tusnády GE (2016)
TOPDOM: database of topologically consistently located protein domains and motifs.
Bioinformatics , in press.
[Journal] [Medline] [PDF] [Server]
Kozma D and Tusnády GE (2015)
TMFoldWeb: a web server for predicting transmembrane protein fold class.
Biol Direct 10 54.
[Journal] [Medline] [PDF] [Server]
Kozma D and Tusnády GE (2015)
TMFoldRec: a statistical potential-based transmembrane protein fold recognition tool.
BMC Bioinformatics 16 201.
[Journal] [Medline] [PDF]
Dobson L, Reményi I, Tusnády GE (2015)
The human transmembrane proteome.
Biol Direct. 10:31.
[Journal] [Medline] [PDF] [Server]
Dobson L, Reményi I, Tusnády GE (2015)
CCTOP: a Consensus Constrained TOPology prediction web server.
Nucleic Acids Res. 43(W1), W408-12.
[Journal] [Medline] [PDF] [Server]
Dobson L, Langó T, Reményi I, Tusnády GE (2015)
Expediting topology data gathering for the TOPDB database.
Nucleic Acids Res. 43(Database issue), D283-9.
[Journal] [Medline] [PDF] [Server]
Kozma D, Simon I, Tusnády GE (2013)
PDBTM: Protein Data Bank of transmembrane proteins after 8 years.
Nucleic Acids Res. 41(Database issue), D524-9
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Kalmár L and Simon I (2008)
TOPDB: Topology Data Bank of Transmembrane Proteins.
Nucleic Acids Res 36, D234-9.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Kalmár L, Hegyi H, Tompa P and Simon I (2008)
TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
Bioinformatics 24, 1469-1470.
[Journal] [Medline] [PDF]
Tusnády GE, Dosztányi Zs and Simon I (2005)
PDB_TM: selection and membrane localization of transmembrane proteins in the Protein Data Bank.
Nucleic Acids Research 33 Database Issue, D275-D278.
[Journal] [Medline] [PDF] [Server]
Tusnády GE, Dosztányi Zs and Simon I (2004)
Transmembrane proteins in protein data bank: identification and classification.
Bioinformatics 20, 2964-2972.
[Journal] [Medline] [PDF] [Server]

Evidence levels

  3D
  Modelable
  Target

Target Track statuses

 selected, cloned or expressed
 solubilized or purified
 crystallized or HSQC satisfactory
 XRAY, NMR or ERAY data collected
 model fitted
 in structure database